A genome-wide map of human genetic interactions inferred from radiation hybrid genotypes

Genome Res. 2010 Aug;20(8):1122-32. doi: 10.1101/gr.104216.109. Epub 2010 May 27.

Abstract

Using radiation hybrid genotyping data, 99% of all possible gene pairs across the mammalian genome were tested for interactions based on co-retention frequencies higher (attraction) or lower (repulsion) than chance. Gene interaction networks constructed from six independent data sets overlapped strongly. Combining the data sets resulted in a network of more than seven million interactions, almost all attractive. This network overlapped with protein-protein interaction networks on multiple measures and also confirmed the relationship between essentiality and centrality. In contrast to other biological networks, the radiation hybrid network did not show a scale-free distribution of connectivity but was Gaussian-like, suggesting a closer approach to saturation. The radiation hybrid (RH) network constitutes a platform for understanding the systems biology of the mammalian cell.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Female
  • Gene Regulatory Networks*
  • Genome, Human / genetics*
  • Genome-Wide Association Study
  • Genotype
  • Humans
  • Male
  • Protein Interaction Mapping
  • Radiation Hybrid Mapping*