F-RISA fungal clones as potential bioindicators of organic and metal contamination in soil

J Appl Microbiol. 2010 Aug;109(2):415-430. doi: 10.1111/j.1365-2672.2009.04665.x. Epub 2009 Dec 28.

Abstract

Aims: This work has examined the effects of a polycyclic aromatic hydrocarbon and selected toxic metals on fungal populations in a soil microcosm.

Methods and results: By using fungal ribosomal intergenic spacer analysis (F-RISA) in combination with real-time PCR quantification, four fungi (D63P2-1, D63C2-1, D21Cu1-1 and D63Pb2-2) with specific primer pairs to each were successfully evaluated for their potential as bioindicators in response to pyrene, copper (Cu) and lead (Pb), supplied singly and in combination.

Conclusions: F-RISA coupled with real-time PCR is a useful approach for the identification of microorganisms with potential as bioindicators of organic and toxic metal contamination.

Significance and impact of the study: These bioindicators could be monitored for their population changes that may indicate pollutant-induced perturbations in a given system.

MeSH terms

  • Copper / pharmacology
  • DNA, Ribosomal Spacer / chemistry
  • Environmental Monitoring / methods*
  • Fungi / classification
  • Fungi / drug effects*
  • Fungi / genetics
  • Lead / pharmacology
  • Metals / analysis
  • Metals / pharmacology*
  • Polymerase Chain Reaction
  • Pyrenes / analysis
  • Pyrenes / pharmacology*
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Soil Pollutants / analysis
  • Soil Pollutants / pharmacology*

Substances

  • DNA, Ribosomal Spacer
  • Metals
  • Pyrenes
  • Soil Pollutants
  • Lead
  • Copper
  • pyrene