Evidence of diketopiperazine and oxazolone structures for HA b2+ ion

J Am Chem Soc. 2009 Dec 9;131(48):17528-9. doi: 10.1021/ja9054542.

Abstract

Peptide fragmentation can lead to an oxazolone or diketopiperazine b(2)(+) ion structure. IRMPD spectroscopy combined with computational modeling and gas-phase H/D exchange was used to study the structure of the b(2)(+) ion from protonated HAAAA. The experimental spectrum of the b(2)(+) ion matches both the experimental spectrum for the protonated cyclic dipeptide HA (a commercial diketopiperazine) and the theoretical spectrum for a diketopiperazine protonated at the imidazole pi nitrogen. A characteristic band at 1875 cm(-1) and increased abundance of the peaks at 1619 and 1683 cm(-1) indicate a second population corresponding to an oxazolone species. H/D exchange also shows a mixture of two populations consistent with a mixture of b(2)(+) ion diketopiperazine and oxazolone structures.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Deuterium Exchange Measurement
  • Diketopiperazines / chemistry*
  • Dipeptides / chemistry*
  • Models, Molecular
  • Oxazolone / chemistry*
  • Peptides, Cyclic / chemistry*
  • Photons
  • Protein Conformation
  • Spectrum Analysis

Substances

  • Diketopiperazines
  • Dipeptides
  • Peptides, Cyclic
  • Oxazolone