Structure of protein interaction networks and their implications on drug design

PLoS Comput Biol. 2009 Oct;5(10):e1000550. doi: 10.1371/journal.pcbi.1000550. Epub 2009 Oct 30.

Abstract

Protein-protein interaction networks (PINs) are rich sources of information that enable the network properties of biological systems to be understood. A study of the topological and statistical properties of budding yeast and human PINs revealed that they are scale-rich and configured as highly optimized tolerance (HOT) networks that are similar to the router-level topology of the Internet. This is different from claims that such networks are scale-free and configured through simple preferential-attachment processes. Further analysis revealed that there are extensive interconnections among middle-degree nodes that form the backbone of the networks. Degree distributions of essential genes, synthetic lethal genes, synthetic sick genes, and human drug-target genes indicate that there are advantageous drug targets among nodes with middle- to low-degree nodes. Such network properties provide the rationale for combinatorial drugs that target less prominent nodes to increase synergetic efficacy and create fewer side effects.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cluster Analysis
  • Drug Delivery Systems / methods*
  • Drug Design*
  • Fungal Proteins / chemistry
  • Fungal Proteins / genetics
  • Fungal Proteins / physiology
  • Genomics / methods*
  • Humans
  • Protein Interaction Domains and Motifs / physiology*
  • Proteins / chemistry
  • Proteins / genetics
  • Proteins / physiology*
  • Signal Transduction
  • Yeasts

Substances

  • Fungal Proteins
  • Proteins