Application of a modified loop-mediated isothermal amplification kit for detecting Norovirus genogroups I and II

J Med Virol. 2009 Dec;81(12):2072-8. doi: 10.1002/jmv.21626.

Abstract

Norovirus is a major etiologic agent in worldwide outbreaks of gastroenteritis associated with food as well as person-to-person transmission. The ubiquitous nature of Norovirus necessitates simple and rapid detection methods with high accuracy and sensitivity. To this end, several investigators have evaluated the usefulness of commercial reverse-transcription loop-mediated isothermal amplification (RT-LAMP) kits for detecting Norovirus genogroups I (GI) and II (GII). In previous studies, the conventional Loopamp kit for Norovirus GII showed a relatively high detection rate, while that for Norovirus GI showed a relatively low detection rate. In the present study, clinical Norovirus specimens were used to compare the detection rate of a modified Loopamp kit for Norovirus GI with the rates of the conventional Loopamp kit for Norovirus GI and an "in-house" RT-LAMP GI primer set, methods which had a high detection rate. Results from the present study showed that the modified Loopamp kit for Norovirus GI had a higher detection rate for two viral genotypes (GI.3, GI.11). On comparison with an "in-house" GII primer set using genotype GII.4 viruses circulating recently, the detection rate by the Loopamp kit for Norovirus GII was found to be higher, with a 98% detection rate. These results indicate the applicability of the modified LAMP kit for GI and the conventional LAMP kit for GII for detection of Noroviruses in clinical samples.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Caliciviridae Infections / diagnosis*
  • Caliciviridae Infections / virology
  • DNA Primers
  • Feces / virology
  • Gastroenteritis / diagnosis*
  • Gastroenteritis / virology
  • Humans
  • Molecular Diagnostic Techniques / methods*
  • Norovirus / genetics
  • Norovirus / isolation & purification*
  • RNA, Viral / genetics
  • RNA, Viral / isolation & purification
  • Reagent Kits, Diagnostic
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Sensitivity and Specificity

Substances

  • DNA Primers
  • RNA, Viral
  • Reagent Kits, Diagnostic