Multi detector-row CT (MDCT), the current preferred method for coronary artery disease assessment, is still affected by motion artefacts. To rule out motion artefacts, qualitative image analysis is usually performed. Our study aimed to develop a quantitative image analysis for motion artefacts detection as an added value to the qualitative analysis. An anthropomorphic moving heart phantom with adjustable heart-rate was scanned on 64-MDCT and dual-source-CT. A new software technique was developed which detected motion artefacts in the coronaries and also in the myocardium, where motion artefacts are more apparent; with direct association to the qualitative analysis. The new quantitative analysis managed to detect motion artefacts in phantom scans and relate them to artefact-induced vessel stenoses. Quantifying these artefacts at corresponding locations in the myocardium, artefact-induced vessel stenosis findings could be avoided. In conclusion, the quantitative analysis together with the qualitative analysis rules out artefact-induced stenosis.