Structure of ristocetin A in complex with a bacterial cell-wall mimetic

Acta Crystallogr D Biol Crystallogr. 2009 Aug;65(Pt 8):832-8. doi: 10.1107/S0907444909018344. Epub 2009 Jul 17.

Abstract

Antimicrobial drug resistance is a serious public health problem and the development of new antibiotics has become an important priority. Ristocetin A is a class III glycopeptide antibiotic that is used in the diagnosis of von Willebrand disease and which has served as a lead compound for the development of new antimicrobial therapeutics. The 1.0 A resolution crystal structure of the complex between ristocetin A and a bacterial cell-wall peptide has been determined. As is observed for most other glycopeptide antibiotics, it is shown that ristocetin A forms a back-to-back dimer containing concave binding pockets that recognize the cell-wall peptide. A comparison of the structure of ristocetin A with those of class I glycopeptide antibiotics such as vancomycin and balhimycin identifies differences in the details of dimerization and ligand binding. The structure of the ligand-binding site reveals a likely explanation for ristocetin A's unique anticooperativity between dimerization and ligand binding.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Anti-Bacterial Agents / chemistry*
  • Anti-Bacterial Agents / metabolism
  • Anti-Bacterial Agents / therapeutic use
  • Biomimetics / trends
  • Cell Wall / chemistry
  • Crystallization
  • Dimerization
  • Drug Design
  • Humans
  • Ligands
  • Methicillin Resistance
  • Methicillin-Resistant Staphylococcus aureus*
  • Protein Binding
  • Protein Conformation
  • Ristocetin / chemistry*
  • Ristocetin / metabolism
  • Ristocetin / therapeutic use
  • Staphylococcal Infections / drug therapy
  • Vancomycin / analogs & derivatives
  • Vancomycin / chemistry
  • Vancomycin / metabolism
  • Vancomycin / therapeutic use
  • X-Rays

Substances

  • Anti-Bacterial Agents
  • Ligands
  • Ristocetin
  • balhimycin
  • ristocetin A
  • Vancomycin