A new fluorescent oligonucleotide probe for in situ detection of s-triazine-degrading Rhodococcus wratislaviensis in contaminated groundwater and soil samples

Water Res. 2009 Jul;43(12):2999-3008. doi: 10.1016/j.watres.2009.04.022. Epub 2009 Apr 24.

Abstract

A bacterial strain (FPA1) capable of using terbuthylazine, simazine, atrazine, 2-hydroxysimazine, deethylatrazine, isopropylamine or ethylamine as its sole carbon source was isolated from a shallow aquifer chronically contaminated with s-triazine herbicides. Based on its 16S rDNA sequence analysis, the strain FPA1 was identified as Rhodococcus wratislaviensis. The disappearance time of 50% of the initial terbuthylazine concentration in the presence of this strain (DT(50)) was 62days. This strain was also able to mineralise the [U-ring (14)C] triazine-ring, albeit at a slow rate. A 16S rRNA target oligonucleotide probe (RhLu) was designed, and the FISH protocol was optimised, in order to detect R. wratislaviensis in s-triazine-contaminated sites. The RhLu probe gave a positive signal (expressed as % of total DAPI-positive cells) in both the groundwater (2.19+/-0.41%) and soil (2.10+/-0.96%) samples analysed. Using the RhLu probe, R. wratislaviensis can be readily detected, and its population dynamics can be easily monitored, in soil and in water ecosystems contaminated with s-triazine. To the best of our knowledge, this is the first report showing the isolation, from groundwater, of a bacterial strain able to degrade s-triazines.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Atrazine / analogs & derivatives
  • Atrazine / metabolism
  • DNA, Ribosomal / genetics
  • Herbicides / metabolism
  • In Situ Hybridization, Fluorescence / methods*
  • Rhodococcus / classification
  • Rhodococcus / genetics*
  • Rhodococcus / metabolism*
  • Simazine / metabolism
  • Soil Pollutants / metabolism*
  • Triazines / metabolism*
  • Water Pollutants, Chemical / metabolism*

Substances

  • DNA, Ribosomal
  • Herbicides
  • Soil Pollutants
  • Triazines
  • Water Pollutants, Chemical
  • deethylatrazine
  • terbutylazine
  • Atrazine
  • Simazine