Carbohydrate-binding properties of a separately folding protein module from beta-1,3-glucanase Lic16A of Clostridium thermocellum

Microbiology (Reading). 2009 Jul;155(Pt 7):2442-2449. doi: 10.1099/mic.0.026930-0. Epub 2009 Apr 23.

Abstract

The multi-modular non-cellulosomal endo-1,3(4)-beta-glucanase Lic16A from Clostridium thermocellum contains a so-called X module (denoted as CBMX) near the N terminus of the catalytic module (191-426 aa). Melting of X-module-containing recombinant proteins revealed an independent folding of the module. CBMX was isolated and studied as a separate fragment. It was shown to bind to various insoluble polysaccharides, including xylan, pustulan, chitin, chitosan, yeast cell wall glucan, Avicel and bacterial crystalline cellulose. CBMX thus contains a hitherto unknown carbohydrate-binding module (CBM54). It did not bind soluble polysaccharides on which Lic16A is highly active. Ca2+ ions had effects on the binding, e.g. stimulated complex formation with chitosan, which was observed only in the presence of Ca2+. The highest affinity to CBMX was shown for xylan (binding constant K=3.1x10(4) M(-1)), yeast cell wall glucan (K=1.4x10(5) M(-1)) and chitin (K=3.3.10(5) M(-1) in the presence of Ca2+). Lic16A deletion derivatives lacking CBMX had lower affinity to lichenan and laminarin and a slight decrease in optimum temperature and thermostability. However, the specific activity was not significantly affected.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Calcium / pharmacology
  • Catalytic Domain
  • Chitin / metabolism
  • Clostridium thermocellum / enzymology*
  • Glucan 1,3-beta-Glucosidase* / chemistry
  • Glucan 1,3-beta-Glucosidase* / metabolism
  • Glucans / metabolism
  • Molecular Sequence Data
  • Polysaccharides / metabolism*
  • Protein Binding / drug effects
  • Protein Folding*
  • Sequence Alignment
  • Sequence Analysis, Protein
  • Substrate Specificity
  • Xylans / metabolism

Substances

  • Glucans
  • Polysaccharides
  • Xylans
  • Chitin
  • Glucan 1,3-beta-Glucosidase
  • Calcium