Nocardioides sediminis sp. nov., isolated from a sediment sample

Int J Syst Evol Microbiol. 2009 Feb;59(Pt 2):280-4. doi: 10.1099/ijs.0.002162-0.

Abstract

A strictly aerobic, motile, short-rod-shaped, Gram-positive-staining actinomycete strain, designated MSL-01(T), was isolated from a sediment sample from Bigeum Island of Korea. 16S rRNA gene sequence analysis revealed that the isolate MSL-01(T) belonged to the genus Nocardioides, with the highest sequence similarity to Nocardioides terrigena DS-17(T) (98.54 %), but the DNA-DNA relatedness to this type strain was 34 %. The physiological properties of strain MSL-01(T) differ from those of Nocardioides terrigena DS-17(T) and other species of Nocardioides. The diamino acid in the cell-wall peptidoglycan of strain MSL-01(T) is ll-diaminopimelic acid, the major menaquinone is MK-8(H(4)) and iso-C(16 : 0) is the major fatty acid component. The name Nocardioides sediminis sp. nov. is proposed for the novel species, with the type strain MSL-01(T) (=DSM 19263(T) =KCTC 19271(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification
  • Actinomycetales / ultrastructure
  • Geologic Sediments / microbiology*
  • Korea
  • Microscopy, Electron, Scanning
  • Molecular Sequence Data
  • Phenotype
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Species Specificity

Substances

  • RNA, Ribosomal, 16S

Associated data

  • GENBANK/EF466110