Base sequence and higher-order structure induce the complex excited-state dynamics in DNA

Science. 2008 Oct 10;322(5899):243-5. doi: 10.1126/science.1161651.

Abstract

The high photostability of DNA is commonly attributed to efficient radiationless electronic relaxation processes. We used femtosecond time-resolved fluorescence spectroscopy to reveal that the ensuing dynamics are strongly dependent on base sequence and are also affected by higher-order structure. Excited electronic state lifetimes in dG-doped d(A)20 single-stranded DNA and dG.dC-doped d(A)20.d(T)20 double-stranded DNA decrease sharply with the substitution of only a few bases. In duplexes containing d(AGA).d(TCT) or d(AG).d(TC) repeats, deactivation of the fluorescing states occurs on the subpicosecond time scale, but the excited-state lifetimes increase again in extended d(G) runs. The results point at more complex and molecule-specific photodynamics in native DNA than may be evident in simpler model systems.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Pairing
  • Base Sequence
  • Circular Dichroism
  • DNA / chemistry*
  • DNA, Single-Stranded / chemistry
  • Hydrogen Bonding
  • Nucleic Acid Conformation
  • Oligodeoxyribonucleotides / chemistry*
  • Photochemistry
  • Purines / chemistry
  • Pyrimidines / chemistry
  • Spectrometry, Fluorescence

Substances

  • DNA, Single-Stranded
  • Oligodeoxyribonucleotides
  • Purines
  • Pyrimidines
  • DNA