Genes involved in the benzoate catabolic pathway in Acinetobacter calcoaceticus PHEA-2

Curr Microbiol. 2008 Dec;57(6):609-14. doi: 10.1007/s00284-008-9251-4. Epub 2008 Sep 10.

Abstract

A putative benM gene encoding a LysR-type regulator located upstream from the benA gene was found in Acinetobacter calcoaceticus PHEA-2. Disruption of benM or benA destroyed the ability of PHEA-2 to utilize benzoate. The benM mutant was used to construct a genomic library for isolation of the complete gene cluster responsible for benzoate degradation. Sequence analysis showed that the cluster has three putative operons: benM, benABCDE, and benKP. Unlike many well-characterized benzoate-degrading bacteria, muconate is unable to induce in vivo transcription of the PHEA-2 ben cluster. Reverse transcriptase-polymerase chain reaction (RT-PCR) results showed that the benABCDE operon is activated by the BenM protein in the presence of benzoate. Moreover, a gel-retardation assay demonstrated that BenM binds to the promotor region of the benA gene. The activities of catechol 1,2-dioxygenase (C12O) and catechol 2,3-dioxygenase (C23O) showed that PHEA-2 converted benzoate to catechol for further degradation, possibly via an ortho-cleavage pathway.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acinetobacter calcoaceticus / genetics*
  • Acinetobacter calcoaceticus / growth & development
  • Acinetobacter calcoaceticus / metabolism*
  • Bacterial Proteins / genetics
  • Benzoates / metabolism*
  • Catechol 1,2-Dioxygenase / metabolism
  • Catechol 2,3-Dioxygenase / metabolism
  • DNA, Bacterial / chemistry
  • DNA, Bacterial / genetics
  • Electrophoretic Mobility Shift Assay
  • Gene Deletion
  • Gene Expression Profiling
  • Gene Order
  • Metabolic Networks and Pathways / genetics*
  • Molecular Sequence Data
  • Multigene Family
  • Operon
  • Promoter Regions, Genetic
  • Protein Binding
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Analysis, DNA
  • Sorbic Acid / analogs & derivatives
  • Sorbic Acid / metabolism
  • Transcriptional Activation / drug effects

Substances

  • Bacterial Proteins
  • Benzoates
  • DNA, Bacterial
  • muconic acid
  • Catechol 1,2-Dioxygenase
  • Catechol 2,3-Dioxygenase
  • Sorbic Acid

Associated data

  • GENBANK/EF489909