The chemical versatility of the beta-alpha-beta fold: catalytic promiscuity and divergent evolution in the tautomerase superfamily

Cell Mol Life Sci. 2008 Nov;65(22):3606-18. doi: 10.1007/s00018-008-8285-x.

Abstract

Tautomerase superfamily members have an amino-terminal proline and a beta-alpha-beta fold, and include 4-oxalocrotonate tautomerase (4-OT), 5-(carboxymethyl)-2-hydroxymuconate isomerase (CHMI), trans- and cis-3-chloroacrylic acid dehalogenase (CaaD and cis-CaaD, respectively), malonate semialdehyde decarboxylase (MSAD), and macrophage migration inhibitory factor (MIF), which exhibits a phenylpyruvate tautomerase (PPT) activity. Pro-1 is a base (4-OT, CHMI, the PPT activity of MIF) or an acid (CaaD, cis-CaaD, MSAD). Components of the catalytic machinery have been identified and mechanistic hypotheses formulated. Characterization of new homologues shows that these mechanisms are incomplete. 4-OT, CaaD, cis-CaaD, and MSAD also have promiscuous activities with a hydratase activity in CaaD, cis-CaaD, and MSAD, PPT activity in CaaD and cis-CaaD, and CaaD and cis-CaaD activities in 4-OT. The shared promiscuous activities provide evidence for divergent evolution from a common ancestor, give hints about mechanistic relationships, and implicate catalytic promiscuity in the emergence of new enzymes.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Carbon-Carbon Double Bond Isomerases / chemistry
  • Carbon-Carbon Double Bond Isomerases / genetics*
  • Carboxy-Lyases / chemistry
  • Carboxy-Lyases / genetics*
  • Catalysis
  • Evolution, Molecular*
  • Hydrolases / chemistry
  • Hydrolases / genetics*
  • Isomerases / chemistry
  • Isomerases / genetics*
  • Macrophage Migration-Inhibitory Factors / chemistry
  • Macrophage Migration-Inhibitory Factors / genetics*
  • Models, Molecular*
  • Protein Structure, Secondary / genetics*

Substances

  • Macrophage Migration-Inhibitory Factors
  • Hydrolases
  • cis-3-chloroacrylic acid dehalogenase
  • trans-3-chloroacrylic acid dehalogenase
  • Carboxy-Lyases
  • malonate semialdehyde decarboxylase
  • 4-oxalocrotonate tautomerase
  • Isomerases
  • Carbon-Carbon Double Bond Isomerases
  • 5-carboxymethyl-2-hydroxymuconate delta-isomerase