Visualizing one-dimensional diffusion of proteins along DNA

Nat Struct Mol Biol. 2008 Aug;15(8):768-74. doi: 10.1038/nsmb.1441. Epub 2008 Aug 5.

Abstract

The ability of proteins to locate specific target sequences or structures among a vast excess of nonspecific DNA is a fundamental property that affects virtually all aspects of biology. Despite this importance, experimental methods have lagged behind the establishment of theoretical principles describing potential target location mechanisms. However, recent advances in single-molecule detection now allow direct visual observation of proteins diffusing along DNA. Here we present an overview of these new observations and discuss the advantages, limitations and future prospects for imaging the motion of proteins along DNA.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Computational Biology / methods*
  • DNA / chemistry*
  • DNA Repair
  • DNA-Directed RNA Polymerases / metabolism
  • Diffusion
  • Gene Expression Regulation
  • Humans
  • Image Processing, Computer-Assisted
  • Models, Genetic
  • Nucleic Acid Conformation
  • Oxidative Stress
  • Protein Binding
  • Protein Interaction Mapping / methods
  • Proteins / chemistry*
  • Time Factors

Substances

  • Proteins
  • DNA
  • DNA-Directed RNA Polymerases