Molecular characterization of porcine picobirnaviruses and development of a specific reverse transcription-PCR assay

J Clin Microbiol. 2008 Jul;46(7):2402-5. doi: 10.1128/JCM.00655-08. Epub 2008 May 28.

Abstract

The molecular characterization of partial- length genomic segment 2 of porcine picobirnavirus (PBV) strains and the development of a specific reverse transcription-PCR (RT-PCR) assay for detection of virus in feces are reported. Phylogenetic analysis indicated that the studied porcine isolates were more closely related (>85% identity) to human PBV belonging to genogroup I than to the other porcine PBV described so far. Analysis by RT-PCR and polyacrylamide gel electrophoresis of fecal samples collected in Venezuela and Argentina showed that PBV circulate at high frequencies in piglets.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Argentina
  • Electrophoresis, Polyacrylamide Gel
  • Feces / virology
  • Molecular Sequence Data
  • Phylogeny
  • Picobirnavirus / genetics
  • Picobirnavirus / isolation & purification*
  • RNA Virus Infections / diagnosis*
  • RNA Virus Infections / virology
  • RNA, Viral / genetics
  • Reverse Transcriptase Polymerase Chain Reaction / methods*
  • Sequence Analysis, DNA
  • Sequence Homology
  • Swine
  • Swine Diseases / diagnosis
  • Swine Diseases / virology*
  • Venezuela

Substances

  • RNA, Viral

Associated data

  • GENBANK/EU104358
  • GENBANK/EU104359
  • GENBANK/EU104361
  • GENBANK/EU104362