Interaction of cationic surfactants with DNA: a single-molecule study

Nucleic Acids Res. 2008 Mar;36(5):1443-9. doi: 10.1093/nar/gkm1146. Epub 2008 Jan 18.

Abstract

The interaction of cationic surfactants with single dsDNA molecules has been studied using force-measuring optical tweezers. For hydrophobic chains of length 12 and greater, pulling experiments show characteristic features (e.g. hysteresis between the pulling and relaxation curves, force-plateau along the force curves), typical of a condensed phase (compaction of a long DNA into a micron-sized particle). Depending on the length of the hydrophobic chain of the surfactant, we observe different mechanical behaviours of the complex (DNA-surfactants), which provide evidence for different binding modes. Taken together, our measurements suggest that short-chain surfactants, which do not induce any condensation, could lie down on the DNA surface and directly interact with the DNA grooves through hydrophobic-hydrophobic interactions. In contrast, long-chain surfactants could have their aliphatic tails pointing away from the DNA surface, which could promote inter-molecular interactions between hydrophobic chains and subsequently favour DNA condensation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cations / chemistry
  • Cetrimonium
  • Cetrimonium Compounds / chemistry
  • DNA / chemistry*
  • Models, Chemical
  • Optical Tweezers
  • Quaternary Ammonium Compounds / chemistry
  • Surface-Active Agents / chemistry*

Substances

  • Cations
  • Cetrimonium Compounds
  • Quaternary Ammonium Compounds
  • Surface-Active Agents
  • decyltrimethylammonium
  • octyltrimethylammonium
  • DNA
  • Cetrimonium