Quantification of oxidative single-base and intrastrand cross-link lesions in unmethylated and CpG-methylated DNA induced by Fenton-type reagents

Nucleic Acids Res. 2007;35(14):4833-44. doi: 10.1093/nar/gkm497. Epub 2007 Jul 10.

Abstract

Methylation of cytosine at CpG sites in mammalian cells plays an important role in the epigenetic regulation of gene expression. Here, we assessed the formation of single-nucleobase lesions and intrastrand cross-link lesions (i.e. G[8-5]C, C[5-8]G, mC[5m-8]G, and G[8-5m]mC, where 'mC' represents 5-methylcytosine) in unmethylated and the corresponding CpG-methylated synthetic double-stranded DNA upon treatment with Fenton-type reagents [i.e. H2O2, ascorbate together with Cu(II) or Fe(II)]. Our results showed that the yields of oxidative single-nucleobase lesions were considerably higher than those of the intrastrand cross-link lesions. Although no significant differences were found for the yields of single-base lesions induced from cytosine and mC, the G[8-5m]mC cross-link was induced approximately 10 times more efficiently than the G[8-5]C cross-link. In addition, the mC[5m-8]G was induced at a level that was approximately 15 times less than G[8-5m]mC, whereas the corresponding C[5-8]G intrastrand cross-link lesion was not detectable. Moreover, Cu(II) is approximately 10-fold as effective as Fe(II) in inducing oxidative DNA lesions. These results suggest that oxidative intrastrand cross-link lesions formed at methylated-CpG sites may account for the previously reported mCG-->TT tandem double mutations induced by Fenton-type reagents.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Ascorbic Acid / chemistry*
  • Chromatography, Liquid
  • Copper / chemistry*
  • CpG Islands*
  • DNA Damage*
  • DNA Methylation*
  • Deoxycytidine / analogs & derivatives
  • Deoxycytidine / chemistry
  • Dimethyl Sulfoxide / chemistry
  • Free Radical Scavengers / chemistry
  • Hydrogen Peroxide / chemistry*
  • Iron / chemistry*
  • Oligodeoxyribonucleotides / chemistry
  • Oxidation-Reduction
  • Tandem Mass Spectrometry

Substances

  • Fenton's reagent
  • Free Radical Scavengers
  • Oligodeoxyribonucleotides
  • Deoxycytidine
  • Copper
  • 5-methyldeoxycytidine
  • Hydrogen Peroxide
  • Iron
  • Ascorbic Acid
  • Dimethyl Sulfoxide