Pyrene-modified guanosine as fluorescent probe for DNA modulated by charge transfer

Bioorg Med Chem. 2008 Jan 1;16(1):100-6. doi: 10.1016/j.bmc.2007.04.064. Epub 2007 May 5.

Abstract

8-(Pyren-1-yl)-2'-deoxyguanosine (Py-G) was incorporated synthetically as a modified DNA base and optical probe into oligonucleotides. A variety of Py-G-modified DNA duplexes have been investigated by methods of optical spectroscopy. The DNA duplex hybridization can be observed by both fluorescence and absorption spectroscopy since the Py-G group exhibits altered properties in single strands versus double strands for both spectroscopy methods. The fluorescence enhancement upon DNA hybridization can be improved significantly by the presence of 7-deazaguanin as an additional modification and charge acceptor three bases away from the Py-G modification site. Moreover, Py-G in DNA can be applied as a photoinducable donor for charge transfer processes when indol is present as an artificial DNA base and charge acceptor. Correctly base-paired duplexes can be discriminated from mismatched ones by comparison of their fluorescence quenching.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Pair Mismatch
  • Base Pairing
  • DNA / analysis*
  • DNA / chemistry
  • Fluorescent Dyes / chemistry*
  • Guanosine / chemistry*
  • Nucleic Acid Hybridization
  • Oligonucleotide Probes / chemical synthesis*
  • Pyrenes*
  • Spectrum Analysis

Substances

  • Fluorescent Dyes
  • Oligonucleotide Probes
  • Pyrenes
  • Guanosine
  • DNA
  • pyrene