Antigenomic Hepatitis delta virus ribozymes self-cleave in 18 M formamide

Nucleic Acids Res. 1991 Mar 25;19(6):1285-9. doi: 10.1093/nar/19.6.1285.

Abstract

The ribozymes derived from Hepatitis delta virus (HDV) RNA appear unique in their sequence requirements for self-cleavage. While truncating the 1679 nucleotide antigenomic HDV RNA, we have characterized the cleavage requirements of a number of ribozymes of intermediate length. Two of these, containing 186 and 106 HDV nucleotides respectively, cleaved to completion in the presence of 18 M formamide. The 186 nucleotide ribozyme also cleaved to completion in 10 M urea. Removal of an additional 10 nts from the 3' terminus of the 106 nt ribozyme resulted in a loss of the ability to cleave in high concentrations of the denaturants. The interaction of nucleotides near the cleavage site with a sequence within this 10 base region may confer unusual stability on these ribozymes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Formamides / chemistry*
  • Hepatitis Delta Virus / genetics
  • Hepatitis Delta Virus / metabolism*
  • Hydrolysis
  • Molecular Sequence Data
  • Nucleic Acid Conformation
  • Osmolar Concentration
  • RNA / chemistry
  • RNA, Catalytic / genetics
  • RNA, Catalytic / metabolism*
  • Transcription, Genetic

Substances

  • Formamides
  • RNA, Catalytic
  • formamide
  • RNA