Identification of four novel HLA-A alleles from an East African population by high-resolution sequence-based typing

Hum Immunol. 2006 Oct;67(10):833-8. doi: 10.1016/j.humimm.2006.07.007. Epub 2006 Aug 10.

Abstract

We report here four novel human leukocyte antigen (HLA)-A alleles identified among an East African population during sequence-based HLA-A typing. The novel alleles were confirmed by sequencing two separate polymerase chain reaction products and by molecular cloning and sequencing multiple clones. The new allele A*9202 is identical to A*0202 at exon 2 and exon 3 except for a single nucleotide difference at codon 43 (CGG-->CAG), resulting in a coding change from Arginine to Glutamine. The second new allele has a synonymous change at codon 139 (GCA-->GCG), that differentiates it from A*680101. The new allele has been named by the World Health Organization nomenclature committee as A*680105. The novel allele A*2630 is identical to A*2603 at exon 2 and exon 3 except for a nonsynonymous change at codon 90 (GAC-->GCC), changed from Aspartic acid to Alanine. The fourth new allele is identical to A*290201 except for a single nucleotide difference at codon 138 (ATG-->GTG), resulting in a coding change from Methionine to Valine. The new allele has been named by the World Health Organization nomenclature committee as A*2915. Identification of these novel HLA-A alleles reflects the genetic diversity of this East African population.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Africa, Eastern
  • Alleles*
  • Base Sequence
  • Female
  • Gene Frequency
  • Genotype
  • HLA-A Antigens / genetics*
  • Humans
  • Molecular Sequence Data
  • Polymorphism, Single Nucleotide / genetics
  • Sequence Analysis, DNA
  • Sequence Homology, Nucleic Acid

Substances

  • HLA-A Antigens

Associated data

  • GENBANK/DQ494174
  • GENBANK/DQ494175
  • GENBANK/DQ494176
  • GENBANK/DQ494177