Pseudonocardia ammonioxydans sp. nov., isolated from coastal sediment

Int J Syst Evol Microbiol. 2006 Mar;56(Pt 3):555-558. doi: 10.1099/ijs.0.63878-0.

Abstract

Actinomycete strain H9T was isolated from coastal sediment of the Jiao-Dong peninsula (near Tsingdao city) in China, and was identified by means of polyphasic taxonomy. The strain grew autotrophically on modified nitrifying medium and heterotrophically on Luria-Bertani medium, with NaCl ranging from 0 to 8% (w/v) (optimal growth at 3.5%). The 16S rRNA gene sequence similarities of strain H9T to members of the genus Pseudonocardia ranged from 93.0 to 97.5%, indicating that strain H9T was phylogenetically related to members of the genus Pseudonocardia. Strain H9T had type IV cell wall and type PIII phospholipid, and its major menaquinone was MK-8 (H4). DNA-DNA relatedness values between strain H9T and Pseudonocardia kongjuensis, Pseudonocardia autotrophica and Pseudonocardia compacta were 42, 13 and 11%, respectively. These results support the conclusion that H9T represents a novel species within the genus Pseudonocardia, for which the name Pseudonocardia ammonioxydans sp. nov. is proposed, with the type strain H9T (= CGMCC 4.1877T = JCM 12462T).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinomycetales / classification*
  • Actinomycetales / genetics
  • Actinomycetales / isolation & purification
  • Actinomycetales / physiology
  • Base Composition
  • China
  • DNA, Ribosomal / chemistry
  • Geologic Sediments / microbiology*
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sequence Analysis, DNA

Substances

  • DNA, Ribosomal
  • RNA, Ribosomal, 16S