Study of the ATP-binding site of helicase IV from Escherichia coli

Biochem Biophys Res Commun. 2006 Mar 17;341(3):828-36. doi: 10.1016/j.bbrc.2006.01.040. Epub 2006 Jan 23.

Abstract

Helicases contain conserved motifs involved in ATP/magnesium/nucleic acid binding and in the mechanisms coupling nucleotide hydrolysis to duplex unwinding. None of these motifs are located at the adenine-binding pocket of the protein. We show here that the superfamily I helicase, helicase IV from Escherichia coli, utilizes a conserved glutamine and conserved aromatic residue to interact with ATP. Other superfamily I helicases such as, UvrD/Rep/PcrA also possess these residues but in addition they interact with adenine via a conserved arginine, which is replaced by a serine in helicase IV. Mutation of this serine residue in helicase IV into histidine or methionine leads to proteins with unaffected ATPase and DNA-binding activities but with low helicase activity. This suggests that residues located at the adenine-binding pocket, in addition to be involved in ATP-binding, are important for efficient coupling between ATP hydrolysis and DNA unwinding.

MeSH terms

  • Adenine / chemistry
  • Adenine / metabolism
  • Adenosine Triphosphatases / metabolism
  • Adenosine Triphosphate / metabolism*
  • Amino Acid Sequence
  • Binding Sites
  • Conserved Sequence
  • DNA Helicases / chemistry*
  • DNA Helicases / genetics
  • DNA Helicases / metabolism*
  • DNA, Bacterial / metabolism
  • Escherichia coli / enzymology*
  • Escherichia coli / genetics
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / genetics
  • Escherichia coli Proteins / metabolism*
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation / genetics
  • Protein Binding
  • Protein Structure, Tertiary
  • Sequence Alignment

Substances

  • DNA, Bacterial
  • Escherichia coli Proteins
  • Adenosine Triphosphate
  • Adenosine Triphosphatases
  • helD protein, E coli
  • DNA Helicases
  • Adenine