Crystal structure of a core spliceosomal protein interface

Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1266-71. doi: 10.1073/pnas.0508048103. Epub 2006 Jan 23.

Abstract

The precise excision of introns from precursor mRNAs (pre-mRNAs) in eukaryotes is accomplished by the spliceosome, a complex assembly containing five small nuclear ribonucleoprotein (snRNP) particles. Human p14, a component of the spliceosomal U2 and U11/U12 snRNPs, has been shown to associate directly with the pre-mRNA branch adenosine early in spliceosome assembly and within the fully assembled spliceosome. Here we report the 2.5-A crystal structure of a complex containing p14 and a peptide derived from the p14-associated U2 snRNP component SF3b155. p14 contains an RNA recognition motif (RRM), the surface of which is largely occluded by a C-terminal alpha-helix and a portion of the SF3b155 peptide. An analysis of RNA.protein crosslinking to wild-type and mutant p14 shows that the branch adenosine directly interacts with a conserved aromatic within a pocket on the surface of the complex. This result, combined with a comparison of the structure with known RRMs and pseudoRRMs as well as model-building by using the electron cryomicroscopy structure of a spliceosomal U11/U12 di-snRNP, suggests that p14.SF3b155 presents a noncanonical surface for RNA recognition at the heart of the mammalian spliceosome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine / chemistry
  • Alternative Splicing
  • Amino Acid Sequence
  • Cross-Linking Reagents / pharmacology
  • Cryoelectron Microscopy
  • Crystallography, X-Ray
  • Humans
  • Introns
  • Microscopy, Electron
  • Models, Molecular
  • Molecular Sequence Data
  • Peptides / chemistry
  • Protein Conformation
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Proteins / chemistry
  • RNA / chemistry
  • RNA, Messenger / metabolism
  • RNA-Binding Proteins / chemistry
  • Ribonucleoprotein, U2 Small Nuclear / chemistry
  • Ribonucleoproteins, Small Nuclear / chemistry*
  • Spliceosomes / chemistry*
  • Spliceosomes / metabolism

Substances

  • Cross-Linking Reagents
  • Peptides
  • Proteins
  • RNA, Messenger
  • RNA-Binding Proteins
  • Ribonucleoprotein, U2 Small Nuclear
  • Ribonucleoproteins, Small Nuclear
  • U11 small nuclear ribonucleoprotein, human
  • U11-U12 small nuclear ribonucleoprotein
  • U2 small nuclear ribonucleoprotein p14
  • RNA
  • Adenosine

Associated data

  • PDB/2F9D
  • PDB/2F9J