Nucleotide sequence of Blackberry yellow vein associated virus, a novel member of the Closteroviridae

Virus Res. 2006 Mar;116(1-2):196-200. doi: 10.1016/j.virusres.2005.10.003. Epub 2005 Dec 5.

Abstract

The complete nucleotide sequence of a novel member of the genus Crinivirus (family Closteroviridae), isolated from blackberry and tentatively named Blackberry yellow vein associated virus, was determined. The virus possesses a bipartite genome. RNA 1 is 7,801 nucleotides in length and papain-like protease, methyltransferase, RNA helicase and RNA-dependent RNA polymerase motifs have been identified in the proteins coded for by this molecule. The polymerase is probably expressed via a +1 ribosomal frameshift, a common feature among members of the Closteroviridae. RNA 2 is 7,917 nucleotides long and encodes nine open reading frames, similar in size and position to orthologous genes of other criniviruses with the exception of a second hydrophobic peptide found near the 5' terminus of the molecule. Phylogenetic analysis revealed a close relationship between Blackberry yellow vein associated virus and Beet pseudo yellows virus, another crinivirus that infects small fruit crops.

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Motifs / genetics
  • Amino Acid Motifs / physiology
  • Base Sequence
  • Crinivirus / genetics*
  • Crinivirus / isolation & purification
  • Fruit / virology
  • Gene Order
  • Genome, Viral
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Viral
  • Rosaceae / virology
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Viral Proteins / genetics
  • Viral Proteins / physiology

Substances

  • RNA, Viral
  • Viral Proteins

Associated data

  • GENBANK/AY776334
  • GENBANK/AY776335