Conformational transition of initiation factor 2 from the GTP- to GDP-bound state visualized on the ribosome

Nat Struct Mol Biol. 2005 Dec;12(12):1145-9. doi: 10.1038/nsmb1012. Epub 2005 Nov 13.

Abstract

Initiation of protein synthesis is a universally conserved event that requires initiation factors IF1, IF2 and IF3 in prokaryotes. IF2 is a GTPase essential for binding initiator transfer RNA to the 30S ribosomal subunit and recruiting the 50S subunit into the 70S initiation complex. We present two cryo-EM structures of the assembled 70S initiation complex comprising mRNA, fMet-tRNA(fMet) and IF2 with either a non-hydrolyzable GTP analog or GDP. Transition from the GTP-bound to the GDP-bound state involves substantial conformational changes of IF2 and of the entire ribosome. In the GTP analog-bound state, IF2 interacts mostly with the 30S subunit and extends to the initiator tRNA in the peptidyl (P) site, whereas in the GDP-bound state IF2 steps back and adopts a 'ready-to-leave' conformation. Our data also provide insights into the molecular mechanism guiding release of IF1 and IF3.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cryoelectron Microscopy
  • Guanosine Diphosphate / chemistry*
  • Guanosine Triphosphate / chemistry*
  • Hydrolysis
  • Prokaryotic Initiation Factor-2 / chemistry*
  • Protein Biosynthesis
  • Protein Conformation
  • RNA, Messenger / chemistry
  • RNA, Transfer, Met / chemistry
  • Ribosomes / chemistry*
  • Thermus thermophilus

Substances

  • Prokaryotic Initiation Factor-2
  • RNA, Messenger
  • RNA, Transfer, Met
  • fMet-tRNA(fMet)
  • Guanosine Diphosphate
  • Guanosine Triphosphate