Mapping the phase diagram of single DNA molecule force-induced melting in the presence of ethidium

Phys Rev Lett. 2005 Oct 7;95(15):158102. doi: 10.1103/PhysRevLett.95.158102. Epub 2005 Oct 6.

Abstract

When a single DNA molecule is stretched beyond its normal contour length, a force-induced melting transition is observed. Ethidium binding increases the DNA contour length, decreases the elongation upon melting, and increases the DNA melting force in a manner that is consistent with the ethidium-induced changes in duplex DNA stability known from thermal melting studies. The DNA stretching curves map out a phase diagram and critical point in the force-extension-ethidium concentration space. Intercalation occurs between alternate base pairs at low forces and between every base pair at high forces.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Binding Sites
  • Computer Simulation
  • DNA / analysis
  • DNA / chemistry*
  • Elasticity
  • Ethidium / chemistry*
  • Micromanipulation / methods*
  • Models, Chemical*
  • Nucleic Acid Conformation
  • Nucleic Acid Denaturation
  • Phase Transition
  • Stress, Mechanical
  • Transition Temperature

Substances

  • DNA
  • Ethidium