Back-priming mode of phi6 RNA-dependent RNA polymerase

J Gen Virol. 2005 Feb;86(Pt 2):521-526. doi: 10.1099/vir.0.80492-0.

Abstract

The RNA-dependent RNA polymerase of the double-stranded RNA bacteriophage phi6 is capable of primer-independent initiation, as are many RNA polymerases. The structure of this polymerase revealed an initiation platform, composed of a loop in the C-terminal domain (QYKW, aa 629-632), that was essential for de novo initiation. A similar element has been identified in hepatitis C virus RNA-dependent RNA polymerase. Biochemical studies have addressed the role of this platform, revealing that a mutant version can utilize a back-priming initiation mechanism, where the 3' terminus of the template adopts a hairpin-like conformation. Here, the mechanism of back-primed initiation is studied further by biochemical and structural methods.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacteriophage phi 6 / metabolism*
  • Base Sequence
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation
  • Nucleic Acid Conformation
  • Pseudomonas / virology
  • RNA, Viral / biosynthesis*
  • RNA, Viral / genetics
  • RNA-Dependent RNA Polymerase / genetics
  • RNA-Dependent RNA Polymerase / metabolism*
  • Templates, Genetic

Substances

  • RNA, Viral
  • RNA-Dependent RNA Polymerase

Associated data

  • PDB/1WAC
  • PDB/R1WAC