Crystal structure of a high-affinity variant of rat alpha-parvalbumin

Biochemistry. 2004 Aug 10;43(31):10008-17. doi: 10.1021/bi0492915.

Abstract

In model peptide systems, Ca2+ affinity is maximized in EF-hand motifs containing four carboxylates positioned on the +x and -x and +z and -z axes; introduction of a fifth carboxylate ligand reduces the affinity. However, in rat beta-parvalbumin, replacement of Ser-55 with aspartate heightens divalent ion affinity [Henzl, M. T., et al. (1996) Biochemistry 35, 5856-5869]. The corresponding alpha-parvalbumin variant (S55D/E59D) likewise exhibits elevated affinity [Henzl, M. T., et al. (2003) Anal. Biochem. 319, 216-233]. To determine whether these mutations produce a variation on the archetypal EF-hand coordination scheme, we have obtained high-resolution X-ray crystallographic data for alpha S55D/E59D. As anticipated, the aspartyl carboxylate replaces the serine hydroxyl at the +z coordination position. Interestingly, the Asp-59 carboxylate abandons the role it plays as an outer sphere ligand in wild-type rat beta, rotating away from the Ca2+ and, instead, forming a hydrogen bond with the amide of Glu-62. Superficially, the coordination sphere in the CD site of alpha S55D/E59D resembles that in the EF site. However, the orientation of the Asp-59 side chain is predicted to stabilize the D-helix, which may contribute to the heightened divalent ion affinity. DSC data indicate that the alpha S55D/E59D variant retains the capacity to bind 1 equiv of Na+. Consistent with this finding, when binding measurements are conducted in K(+)-containing buffer, divalent ion affinity is markedly higher. In 0.15 M KCl and 0.025 M Hepes-KOH (pH 7.4) at 5 degrees C, the macroscopic Ca2+ binding constants are 1.8 x 10(10) and 2.0 x 10(9) M(-1). The corresponding Mg2+ binding constants are 2.7 x 10(6) and 1.2 x 10(5) M(-1).

Publication types

  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Amino Acid Substitution* / genetics
  • Animals
  • Aspartic Acid / genetics
  • Binding Sites
  • Calcium / chemistry
  • Calcium-Binding Proteins / chemistry*
  • Calcium-Binding Proteins / genetics
  • Cations, Divalent
  • Crystallization
  • Crystallography, X-Ray
  • EF Hand Motifs
  • Glutamic Acid / genetics
  • Magnesium / chemistry
  • Parvalbumins / chemistry*
  • Parvalbumins / genetics
  • Potassium / chemistry
  • Protein Binding
  • Protein Isoforms / chemistry
  • Protein Isoforms / genetics
  • Protein Structure, Secondary
  • Rats
  • Serine / genetics
  • Solutions

Substances

  • Calcium-Binding Proteins
  • Cations, Divalent
  • Parvalbumins
  • Protein Isoforms
  • Solutions
  • Aspartic Acid
  • Glutamic Acid
  • Serine
  • Magnesium
  • Potassium
  • Calcium

Associated data

  • PDB/1S3P