Purification, crystallization and X-ray diffraction analysis of a recombinant Fab that recognizes a human blood-group antigen

Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):788-91. doi: 10.1107/S0907444904002963. Epub 2004 Mar 23.

Abstract

The NNA7 Fab fragment recognizes the human glycopeptide N blood-group antigen and has a high affinity for N-type glycophorin A (GPA). To provide insight into how antibodies recognize glycopeptide antigens, soluble Fab fragments were expressed in Escherichia coli, purified and crystallized using the hanging-drop vapor-diffusion method at 293 K. The best crystals were obtained from solutions of PEG monomethyl ether 5000 containing 4-8 mM yttrium chloride (YCl3). This rare-earth ion, which could be substituted with various lanthanides, changed the habit of crystals from multinucleated rods with a diffraction limit of 4.25 A resolution to a diamond-shaped morphology that grew as single crystals and diffracted X-rays to 1.75 A resolution. Data were collected that indicated that the crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 57.9, b = 77.1, c = 118.1 A and one Fab fragment per asymmetric unit. A molecular-replacement solution has been obtained and 86% of the molecule was fitted by use of an automated refinement procedure (ARP).

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Antigen-Antibody Complex / chemistry
  • Cloning, Molecular
  • Crystallization*
  • Crystallography, X-Ray
  • Humans
  • Immunoglobulin Fab Fragments / chemistry*
  • Immunoglobulin Fab Fragments / immunology
  • MNSs Blood-Group System / chemistry*
  • MNSs Blood-Group System / immunology
  • Models, Molecular
  • Recombinant Proteins / chemistry

Substances

  • Antigen-Antibody Complex
  • Immunoglobulin Fab Fragments
  • MNSs Blood-Group System
  • Recombinant Proteins