Improved mass analysis of oligoribonucleotides by 13C, 15N double depletion and electrospray ionization FT-ICR mass spectrometry

Anal Chem. 2004 Mar 15;76(6):1804-9. doi: 10.1021/ac030299e.

Abstract

13C, 15N doubly depleted 32-ribonucleotide was synthesized enzymatically by in vitro transcription from nucleoside triphosphates isolated from E. coli grown in a minimal medium containing 12C, 14N-enriched glucose and ammonium sulfate. Following purification and desalting by reversed-phase HPLC, buffer exchange with Microcon YM-3, and ethanol precipitation, electrospray ionization Fourier transform ion cyclotron resonance mass spectra revealed greatly enhanced abundance of monoisotopic ions (by a factor of approximately 100) and a narrower isotopic distribution with higher signal-to-noise ratio. The abrupt onset and high magnitude of the monoisotopic species promise to facilitate accurate mass measurement of RNA's.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Carbon Isotopes
  • Fourier Analysis
  • Nitrogen Isotopes
  • Oligoribonucleotides / analysis*
  • Oligoribonucleotides / chemistry*
  • Ribonucleotides / analysis
  • Ribonucleotides / chemistry
  • Salts / chemistry
  • Spectrometry, Mass, Electrospray Ionization / methods*
  • Spectroscopy, Fourier Transform Infrared / methods*

Substances

  • Carbon Isotopes
  • Nitrogen Isotopes
  • Oligoribonucleotides
  • Ribonucleotides
  • Salts