The octaplex structure of d(GCGAGAGC) with I-motif of guanine quartet, controlled by potassium concentration

Nucleic Acids Res Suppl. 2003:(3):223-4. doi: 10.1093/nass/3.1.223.

Abstract

Crystal structures of DNA octamer with the sequence d(GCGAGAGC) have been determined by X-ray analyses to investigate the specific DNA structural motifs that are useful for designing various functional DNA molecules. The octamers are assembled to form an octaplex with G-quartets and water-mediated A-quartets. At relatively high potassium concentration, however, the octaplex is split into two quadruplexes, each of which contains two G-duets. The two crystal forms suggest a dynamic formation of an octaplex from two quadruplexes in solution.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Crystallography, X-Ray
  • DNA / chemistry*
  • Guanine / chemistry*
  • Models, Molecular
  • Nucleic Acid Conformation*
  • Potassium / chemistry*

Substances

  • Guanine
  • DNA
  • Potassium