Connectivity-based ab initio phasing: from low resolution to a secondary structure

Acta Crystallogr D Biol Crystallogr. 2003 Oct;59(Pt 10):1702-15. doi: 10.1107/s0907444903015154. Epub 2003 Sep 19.

Abstract

The connectivity-based phasing method currently allows ab initio determination of phases for several hundred reflections. In the case of large macromolecular crystals, these reflections correspond to a very low resolution and the structural information deduced essentially consists of the molecular packing and an approximate molecular envelope. However, when the unit cell is relatively small, such a phasing procedure can produce phases such that secondary-structure elements can be identified in the corresponding maps. In the case of the pheromone Er-1, all three alpha-helices present are seen in the ab initio phased maps. In the case of protein G, not only the alpha-helix but also some individual beta-strands are distinguishable.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cluster Analysis
  • Crystallization
  • Crystallography, X-Ray / methods*
  • Fourier Analysis
  • GTP-Binding Proteins / chemistry
  • Models, Chemical
  • Models, Molecular
  • Pheromones / chemistry
  • Protein Structure, Secondary
  • Proteins / chemistry*

Substances

  • Pheromones
  • Proteins
  • GTP-Binding Proteins