The structural basis of receptor-binding by Escherichia coli associated with diarrhea and septicemia

J Mol Biol. 2003 Aug 22;331(4):897-905. doi: 10.1016/s0022-2836(03)00841-6.

Abstract

GafD in Escherichia coli G (F17) fimbriae is associated with diarrheal disease, and the structure of the ligand-binding domain, GafD1-178, has been determined at 1.7A resolution in the presence of the receptor sugar N-acetyl-D-glucosamine. The overall fold is a beta-barrel jelly-roll fold. The ligand-binding site was identified and localized to the side of the molecule. Receptor binding is mediated by side-chain as well main-chain interactions. Ala43-Asn44, Ser116-Thr117 form the sugar acetamide specificity pocket, while Asp88 confers tight binding and Trp109 appears to position the ligand. There is a disulfide bond that rigidifies the acetamide specificity pocket. The three fimbrial lectins, GafD, FimH and PapG share similar beta-barrel folds but display different ligand-binding regions and disulfide-bond patterns. We suggest an evolutionary path for the evolution of the very diverse fimbrial lectins from a common ancestral fold.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylglucosamine / metabolism
  • Adhesins, Bacterial / chemistry*
  • Adhesins, Bacterial / metabolism*
  • Amino Acid Sequence
  • Bacterial Adhesion*
  • Binding Sites
  • Crystallography, X-Ray
  • Diarrhea / microbiology*
  • Disulfides
  • Escherichia coli / chemistry*
  • Escherichia coli / metabolism*
  • Escherichia coli Proteins / chemistry*
  • Escherichia coli Proteins / metabolism*
  • Fimbriae Proteins / chemistry*
  • Fimbriae Proteins / metabolism*
  • Hydrogen Bonding
  • Lectins / chemistry*
  • Lectins / metabolism*
  • Ligands
  • Models, Molecular
  • Molecular Sequence Data
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Sepsis / microbiology*
  • Structure-Activity Relationship

Substances

  • Adhesins, Bacterial
  • Disulfides
  • Escherichia coli Proteins
  • GafD protein, E coli
  • Lectins
  • Ligands
  • Fimbriae Proteins
  • Acetylglucosamine

Associated data

  • PDB/1OIO
  • PDB/R1OIOSF