The role of side chain conformational flexibility in surface recognition by Tenebrio molitor antifreeze protein

Protein Sci. 2003 Jul;12(7):1323-31. doi: 10.1110/ps.0369503.

Abstract

Two-dimensional nuclear magnetic resonance spectroscopy was used to investigate the flexibility of the threonine side chains in the beta-helical Tenebrio molitor antifreeze protein (TmAFP) at low temperatures. From measurement of the (3)J(alphabeta) (1)H-(1)H scalar coupling constants, the chi(1) angles and preferred rotamer populations can be calculated. It was determined that the threonines on the ice-binding face of the protein adopt a preferred rotameric conformation at near freezing temperatures, whereas the threonines not on the ice-binding face sample many rotameric states. This suggests that TmAFP maintains a preformed ice-binding conformation in solution, wherein the rigid array of threonines that form the AFP-ice interface matches the ice crystal lattice. A key factor in binding to the ice surface and inhibition of ice crystal growth appears to be the close surface-to-surface complementarity between the AFP and crystalline ice, and the lack of an entropic penalty associated with freezing out motions in a flexible ligand.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Antifreeze Proteins / chemistry*
  • Crystallography, X-Ray
  • Magnetic Resonance Spectroscopy / methods
  • Molecular Sequence Data
  • Pliability
  • Protein Conformation
  • Protein Isoforms / chemistry
  • Solubility
  • Temperature
  • Tenebrio / chemistry*
  • Threonine / chemistry

Substances

  • Antifreeze Proteins
  • Protein Isoforms
  • Threonine