Analysis of 4.3 kilobases of divergent locus B of macaque retroperitoneal fibromatosis-associated herpesvirus reveals a close similarity in gene sequence and genome organization to Kaposi's sarcoma-associated herpesvirus

J Virol. 2003 May;77(9):5084-97. doi: 10.1128/jvi.77.9.5084-5097.2003.

Abstract

We previously identified retroperitoneal fibromatosis-associated herpesvirus (RFHV) as a simian homolog of Kaposi's sarcoma-associated herpesvirus (KSHV) in a fibroproliferative malignancy of macaques that has similarities to Kaposi's sarcoma. In this report, we cloned 4.3 kb of divergent locus B (DL-B) flanking the DNA polymerase gene from two variants of RFHV from different species of macaque with a consensus degenerate hybrid oligonucleotide primer approach. Within the DL-B region of RFHV, viral homologs of the cellular interleukin-6, dihydrofolate reductase, and thymidylate synthase genes were identified, along with a homolog of the gammaherpesvirus open reading frame (ORF) 10. In addition, a homolog of the KSHV ORF K3, the modulator of immune recognition-1, was identified. Our data show a close similarity in sequence conservation, gene content, and genomic structure between RFHV and KSHV which strongly supports the grouping of these viral species within the same RV-1 rhadinovirus lineage and the hypothesis that RFHV is the macaque homolog of KSHV.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Cloning, Molecular
  • DNA-Directed DNA Polymerase / genetics
  • Evolution, Molecular*
  • Herpesviridae Infections / veterinary
  • Herpesviridae Infections / virology
  • Herpesvirus 8, Human / chemistry
  • Herpesvirus 8, Human / classification*
  • Herpesvirus 8, Human / genetics*
  • Humans
  • Macaca mulatta
  • Macaca nemestrina
  • Molecular Sequence Data
  • Monkey Diseases / virology
  • Phylogeny
  • Retroperitoneal Fibrosis / veterinary
  • Retroperitoneal Fibrosis / virology
  • Retroperitoneal Neoplasms / veterinary
  • Retroperitoneal Neoplasms / virology
  • Rhadinovirus* / chemistry
  • Rhadinovirus* / classification*
  • Rhadinovirus* / genetics*
  • Sarcoma, Kaposi / virology
  • Sequence Analysis, DNA
  • Tumor Virus Infections / veterinary
  • Tumor Virus Infections / virology

Substances

  • DNA-Directed DNA Polymerase

Associated data

  • GENBANK/AF005479
  • GENBANK/AF204166
  • GENBANK/AF210726