PGAGENE: integrating quantitative gene-specific results from the NHLBI programs for genomic applications

Bioinformatics. 2003 Apr 12;19(6):778-9. doi: 10.1093/bioinformatics/btg066.

Abstract

PGAGENE is a web-based gene-specific genomic data search engine, which allows users to search over 5.9 million pieces of collective genetic and genomic data from the NHLBI supported Programs for Genomic Applications. This data includes microarray measurements, SNPs, and mutations, and data may be found using symbols, parts of gene names or products, Affymetrix probe IDs, GenBank accession numbers, UniGene IDs, dbSNP IDs, and others. The PGAGENE indexing agent periodically maps all publicly available gene-specific PGA data onto LocusLink using dynamically generated cross-referencing tables.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Base Sequence
  • Cooperative Behavior
  • Database Management Systems*
  • Databases, Nucleic Acid*
  • Gene Expression Profiling / methods
  • Genomics / methods*
  • Information Storage and Retrieval / methods*
  • Interinstitutional Relations
  • Internet*
  • Molecular Sequence Data
  • National Institutes of Health (U.S.)
  • Oligonucleotide Array Sequence Analysis / methods*
  • Sequence Alignment / methods
  • Sequence Analysis, DNA / methods*
  • United States