Beta-turn formation by a six-residue linear peptide in solution

J Pept Res. 2002 Aug;60(2):75-80. doi: 10.1034/j.1399-3011.2002.02982.x.

Abstract

A model peptide AAGDYY-NH2 (B1), which is found to adopt a beta-turn conformation in the TEM-1 beta-lactamase inhibitor protein (BLIP) in the TEM-1/BLIP co-crystal, was synthesized to elucidate the mechanism of its beta-turn formation and stability. Its structural preferences in solution were comprehensively characterized using CD, FT-IR and 1H NMR spectroscopy, respectively. The set of observed diagnostic NOEs, the restrained molecular dynamics simulation, CD and FT-IR spectroscopy confirmed the formation of a beta-turn in solution by the model peptide. The dihedral angles [(phi3, phi3) (phi4, phi4)] of [(-52 degrees, -32 degrees ) (-38 degrees, -44 degrees )] of Gly-Asp fragment in the model peptide are consistent with those of a type III beta-turn. In a conclusion, the conformational preference of the linear hexapeptide B1 in solution was determined, and it would provide a simple template to study the mechanism of beta-turn formation and stability.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Circular Dichroism
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular / methods
  • Oligopeptides / chemistry*
  • Protein Folding
  • Protein Structure, Secondary*
  • Solutions
  • Spectroscopy, Fourier Transform Infrared
  • Thermodynamics
  • beta-Lactamase Inhibitors
  • beta-Lactamases

Substances

  • Oligopeptides
  • Solutions
  • beta-Lactamase Inhibitors
  • beta-Lactamases
  • beta-lactamase TEM-1