Rhodobacter capsulatus utilizes two terminal oxidases for aerobic respiration, cytochrome cbb(3) and ubiquinol oxidase. To determine the transcription factors involved in terminal oxidase expression, ccoN-lacZ and cydA-lacZ protein fusions were assayed in a variety of regulatory mutants. The results of this and previous studies indicate that cytochrome cbb(3) expression is controlled by regB-regA, fnrL, and hvrA and that ubiquinol oxidase expression is controlled by regB-regA, fnrL, hvrA, crtJ, and aerR.