A branched N-linked glycan at atomic resolution in the 1.12 A structure of rhamnogalacturonan acetylesterase

Acta Crystallogr D Biol Crystallogr. 2002 Jan;58(Pt 1):111-9. doi: 10.1107/s0907444901018479. Epub 2001 Dec 21.

Abstract

The crystal structure of the glycoprotein rhamnogalacturonan acetylesterase from Aspergillus aculeatus has been refined to a resolution of 1.12 A using synchrotron data collected at 263 K. Both of the two putative N-glycosylation sites at Asn104 and Asn182 are glycosylated and, owing to crystal contacts, the glycan structure at Asn182 is exceptionally well defined in the electron-density maps, showing the six-carbohydrate structure Manalpha1-6(Manalpha1-3)Manalpha1-6Manbeta1-4GlcNAcbeta1-4GlcNAcbeta-Asn182. Equivalent carbohydrate residues were restrained to have similar geometries, but were refined without target values. The refined bond lengths and angles were compared with the values obtained from small-molecule studies that form the basis for the dictionaries used for glycoprotein refinement.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetylesterase / chemistry*
  • Carbohydrate Sequence
  • Crystallography, X-Ray
  • Models, Molecular
  • Molecular Sequence Data
  • Polysaccharides / chemistry*

Substances

  • Polysaccharides
  • rhamnogalacturonan acetylesterase
  • Acetylesterase