Chemical and enzymatic synthesis of tRNAs for high-throughput crystallization

RNA. 2001 Nov;7(11):1671-8.

Abstract

Preparation of large quantities of RNA molecules of a defined sequence is a prerequisite for biophysical analysis, and is particularly important to the determination of high-resolution structure by X-ray crystallography. We describe improved methods for the production of multimilligram quantities of homogeneous tRNAs, using a combination of chemical synthesis and enzymatic approaches. Transfer RNA half-molecules with a break in the anticodon loop were chemically synthesized on a preparative scale, ligated enzymatically, and cocrystallized with an aminoacyl-tRNA synthetase, yielding crystals diffracting to 2.4 A resolution. Multimilligram quantities of tRNAs with greatly reduced 3' heterogeneity were also produced via transcription by T7 RNA polymerase, utilizing chemically modified DNA half-molecule templates. This latter approach eliminates the need for large-scale plasmid preparations, and yields synthetase cocrystals diffracting to 2.3 A resolution at much lower RNA:protein stoichiometries than previously required. These two approaches developed for a tRNA-synthetase complex permit the detailed structural study of "atomic-group" mutants.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acyl-tRNA Synthetases / metabolism*
  • Crystallization
  • Crystallography, X-Ray
  • DNA-Directed RNA Polymerases / metabolism*
  • Nucleic Acid Conformation
  • RNA, Transfer / chemical synthesis*
  • RNA, Transfer / chemistry
  • Viral Proteins

Substances

  • Viral Proteins
  • RNA, Transfer
  • bacteriophage T7 RNA polymerase
  • DNA-Directed RNA Polymerases
  • Amino Acyl-tRNA Synthetases