Preferred proline puckerings in cis and trans peptide groups: implications for collagen stability

Protein Sci. 2001 Dec;10(12):2627-32. doi: 10.1110/ps.ps.26601a.

Abstract

The interplay between side-chain and main-chain conformations is a distinctive characteristic of proline residues. Here we report the results of a statistical analysis of proline conformations using a large protein database. In particular, we found that proline residues with the preceding peptide bond in the cis state preferentially adopt a down puckering. Indeed, out of 178 cis proline residues, as many as 145 (81%) are down. By analyzing the 1-4 and 1-5 nonbonding distances between backbone atoms, we provide a structural explanation for the observed trend. The observed correlation between proline puckering and peptide bond conformation suggests a new mechanism to explain the reported shift of the cis-trans equilibrium in proline derivatives. The implications of these results for the current models of collagen stability are also discussed.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Collagen / chemistry*
  • Hydroxyproline / chemistry*
  • Models, Molecular
  • Peptides / chemistry*
  • Proline / chemistry*
  • Protein Binding
  • Protein Conformation

Substances

  • Peptides
  • Collagen
  • Proline
  • Hydroxyproline