Comparison of Vif sequences from diverse geographical isolates of HIV type 1 and SIV(cpz) identifies substitutions common to subtype C isolates and extensive variation in a proposed nuclear transport inhibition signal

AIDS Res Hum Retroviruses. 2001 Jan 20;17(2):169-77. doi: 10.1089/08892220150217256.

Abstract

We compared the Vif sequences from more than 100 group M and O strains of HIV-1 isolated from diverse geographical regions and various subtypes, in order to identify regions of high variability and those amino acid residues that were highly conserved or invariant. Our analysis found that there were 10 highly conserved domains with additional invariant residues located throughout the protein. Our analysis revealed that in the highly conserved amino-terminal domain, all subtype C isolates examined had a methionine-to-leucine substitution at position 8 and most subtype C isolates had an arginine-to-lysine substitution at position 17 of the protein. Our analysis revealed that the MAP kinase phosphorylation sites, and the cysteine residues at positions 114 and 133, were conserved in Vif sequences from group M, group O, and SIV cpz isolates. Our analysis also shows that the RKKR motif at positions 90--93, proposed as a nuclear transport inhibition signal (NTIS), was conserved neither in different geographical group M and O HIV-1 isolates nor in SIVcpz.

Publication types

  • Comparative Study
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Amino Acid Substitution
  • Animals
  • Arginine / genetics
  • Biological Transport
  • Cell Nucleus / metabolism
  • Cell Nucleus / virology
  • Consensus Sequence
  • Gene Products, vif / genetics*
  • Gene Products, vif / metabolism
  • Genetic Variation
  • HIV-1 / genetics*
  • Human Immunodeficiency Virus Proteins
  • Humans
  • Leucine / genetics
  • Lysine / genetics
  • Methionine / genetics
  • Molecular Sequence Data
  • Pan troglodytes
  • Peptide Fragments / metabolism
  • Sequence Alignment
  • Simian Immunodeficiency Virus / genetics*
  • Viral Regulatory and Accessory Proteins / genetics
  • vif Gene Products, Human Immunodeficiency Virus

Substances

  • Gene Products, vif
  • Human Immunodeficiency Virus Proteins
  • Peptide Fragments
  • Viral Regulatory and Accessory Proteins
  • vif Gene Products, Human Immunodeficiency Virus
  • vpu protein, Human immunodeficiency virus 1
  • Arginine
  • Methionine
  • Leucine
  • Lysine