Specificity and affinity of substrate binding by a family 17 carbohydrate-binding module from Clostridium cellulovorans cellulase 5A

Biochemistry. 2000 Sep 12;39(36):11129-36. doi: 10.1021/bi0007728.

Abstract

The C-terminal carbohydrate-binding module (CBM17) from Clostridium cellulovorans cellulase 5A is a beta-1,4-glucan binding module with a preference for soluble chains. CBM17 binds to phosphoric acid swollen Avicel (PASA) and Avicel with association constants of 2.9 (+/-0.2) x 10(5) and 1.6 (+/-0.2) x 10(5) M(-1), respectively. The capacity values for PASA and Avicel were 11.9 and 0.4 micromol/g of cellulose, respectively. CBM17 did not bind to crystalline cellulose. CBM17 bound tightly to soluble barley beta-glucan and the derivatized celluloses HEC, EHEC, and CMC. The association constants for binding to barley beta-glucan, HEC, and EHEC were approximately 2.0 x 10(5) M(-1). Significant binding affinities were found for cello-oligosaccharides greater than three glucose units in length. The affinities for cellotriose, cellotetraose, cellopentaose, and cellohexaose were 1.2 (+/-0.3) x 10(3), 4.3 (+/-0.4) x 10(3), 3.8 (+/-0.1) x 10(4), and 1.5 (+/-0.0) x 10(5) M(-1), respectively. Fluorescence quenching studies and N-bromosuccinimide modification indicate the participation of tryptophan residues in ligand binding. The possible architecture of the ligand-binding site is discussed in terms of its binding specificity, affinity, and the participation of tryptophan residues.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Amino Acids / metabolism
  • Bacterial Proteins / chemistry
  • Binding Sites
  • Carrier Proteins / chemistry
  • Cellulase / biosynthesis
  • Cellulase / chemistry
  • Cellulase / metabolism*
  • Clostridium / enzymology*
  • Glucans / metabolism*
  • Hydrogen-Ion Concentration
  • Molecular Sequence Data
  • Oligosaccharides / metabolism
  • Peptide Fragments / biosynthesis
  • Peptide Fragments / chemistry
  • Peptide Fragments / metabolism*
  • Polysaccharides / metabolism
  • Sequence Homology, Amino Acid*
  • Sodium Chloride / pharmacology
  • Spectrometry, Fluorescence
  • Spectrophotometry, Ultraviolet
  • Substrate Specificity

Substances

  • Amino Acids
  • Bacterial Proteins
  • Carrier Proteins
  • Glucans
  • Oligosaccharides
  • Peptide Fragments
  • Polysaccharides
  • cellulose binding protein A, Clostridium cellulovorans
  • cellohexaose
  • maltopentaose
  • Sodium Chloride
  • 1,4-glucan
  • endoglucanase Cel5A
  • Cellulase