Alternative splicing of synaptotagmins involving transmembrane exon skipping

FEBS Lett. 1999 Nov 5;460(3):417-22. doi: 10.1016/s0014-5793(99)01382-4.

Abstract

The synaptotagmin gene family currently includes 12 members. Analysis of the three known genomic synaptotagmin sequences reveals conserved exon-intron patterns which delineate the synaptotagmin structural domains. We used expressed sequence tag, reverse transcription PCR and RNAse protection assay analysis of synaptotagmin messenger RNAs to demonstrate the occurrence of alternative splicing events involving a number of exons. Exon-skipped messages where transmembrane sequences have been removed or altered were found to be abundantly expressed by synaptotagmins 1, 4, 6 and 7. Although the expression of most synaptotagmins predominates in neural tissue, we find that by contrast, synaptotagmin 6 is more abundant in thymus.

MeSH terms

  • Alternative Splicing / genetics*
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Calcium-Binding Proteins*
  • Cell Membrane / genetics
  • Cell Membrane / metabolism
  • Chromosomes, Human, Pair 11 / genetics
  • Exons / genetics*
  • Humans
  • Membrane Glycoproteins / biosynthesis
  • Membrane Glycoproteins / genetics*
  • Membrane Proteins / genetics*
  • Molecular Sequence Data
  • Nerve Tissue Proteins / biosynthesis
  • Nerve Tissue Proteins / genetics*
  • Organ Specificity
  • RNA / analysis
  • Rats
  • Rats, Sprague-Dawley
  • Reverse Transcriptase Polymerase Chain Reaction
  • Sequence Analysis, DNA
  • Synaptotagmins

Substances

  • Calcium-Binding Proteins
  • Membrane Glycoproteins
  • Membrane Proteins
  • Nerve Tissue Proteins
  • SYT6 protein, human
  • Syt6 protein, rat
  • Synaptotagmins
  • RNA

Associated data

  • GENBANK/AC006409
  • GENBANK/Y19236
  • GENBANK/Y19237
  • GENBANK/Y19238
  • GENBANK/Y19239
  • GENBANK/Y19240
  • GENBANK/Y19241
  • GENBANK/Y19242