NMR solution structure of the catalytic fragment of human fibroblast collagenase complexed with a sulfonamide derivative of a hydroxamic acid compound

Biochemistry. 1999 Jun 1;38(22):7085-96. doi: 10.1021/bi982576v.

Abstract

The solution structure of the catalytic fragment of human fibroblast collagenase (MMP-1) complexed with a sulfonamide derivative of a hydroxamic acid compound (CGS-27023A) has been determined using two-dimensional and three-dimensional heteronuclear NMR spectroscopy. The solution structure of the complex was calculated by means of hybrid distance geometry-simulated annealing using a combination of experimental NMR restraints obtained from the previous refinement of the inhibitor-free MMP-1 (1) and recent restraints for the MMP-1:CGS-27023A complex. The hydroxamic acid moiety of CGS-27023A was found to chelate to the "right" of the catalytic zinc where the p-methoxyphenyl sits in the S1' active-site pocket, the isopropyl group is in contact with H83 and N80, and the pyridine ring is solvent exposed. The sulfonyl oxygens are in hydrogen-bonding distance to the backbone NHs of L81 and A82. This is similar to the conformation determined by NMR of the inhibitor bound to stromelysin (2, 3). A total of 48 distance restraints were observed between MMP-1 and CGS-27023A from 3D 13C-edited/12C-filtered NOESY and 3D 15N-edited NOESY experiments. An additional 18 intramolecular restraints were observed for CGS-27023A from a 2D 12C-filtered NOESY experiment. A minimal set of NMR experiments in combination with the free MMP-1 assignments were used to assign the MMP-1 (1)H, 13C, and 15N resonances in the MMP-1:CGS-27023A complex. The assignments of CGS-27023A in the complex were obtained from 2D 12C-filtered NOESY and 2D 12C-filtered TOCSY experiments.

Publication types

  • Comparative Study

MeSH terms

  • Catalysis
  • Collagenases / chemistry*
  • Computer Simulation
  • Crystallography, X-Ray
  • Fibroblasts / enzymology*
  • Humans
  • Hydroxamic Acids / chemistry*
  • Macromolecular Substances
  • Matrix Metalloproteinase 1
  • Matrix Metalloproteinase 3 / chemistry
  • Matrix Metalloproteinase 8
  • Matrix Metalloproteinase Inhibitors
  • Models, Molecular
  • Nuclear Magnetic Resonance, Biomolecular
  • Peptide Fragments / antagonists & inhibitors
  • Peptide Fragments / chemistry*
  • Protease Inhibitors / chemistry*
  • Protein Conformation
  • Pyrazines*
  • Solutions
  • Sulfonamides / chemistry*

Substances

  • CGS 27023A
  • Hydroxamic Acids
  • Macromolecular Substances
  • Matrix Metalloproteinase Inhibitors
  • Peptide Fragments
  • Protease Inhibitors
  • Pyrazines
  • Solutions
  • Sulfonamides
  • Collagenases
  • Matrix Metalloproteinase 3
  • Matrix Metalloproteinase 8
  • Matrix Metalloproteinase 1

Associated data

  • PDB/3AYK
  • PDB/4AYK